{
  "_id": "6acf51d6d9de2f3f33fcae26",
  "Package": "BWGS",
  "Type": "Package",
  "Title": "BreedWheat Genomic Selection Pipeline",
  "Version": "3.0.0",
  "Authors@R": "c(person(\"Louis Gautier\", \"Tran\", email = \"louis.gautier.tran@eurominister.com\", role = c(\"aut\", \"cre\")),\nperson(\"Gilles\", \"Charmet\", email = \"gilles.charmet@inra.fr\", role = \"aut\"),\nperson(\"Delphine\", \"Ly\", email = \"ly-delphine@live.fr\", role = \"ctb\"),\nperson(\"Sophie\", \"Bouchet\", email = \"sophie.bouchet@inra.fr\", role = \"ctb\"))",
  "Description": "Package for Breed Wheat Genomic Selection Pipeline. The R\npackage 'BWGS' is developed by Louis Gautier Tran\n<louis.gautier.tran@eurominister.com> and Gilles Charmet\n<gilles.charmet@inra.fr>. This repository is forked from\noriginal repository <https://forgemia.inra.fr/umr-gdec/bwgs>\nand modified as a R package.",
  "License": "GPL(>=2)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "URL": "https://github.com/eurominister/BWGS",
  "BugReports": "https://github.com/eurominister/BWGS/issues",
  "RoxygenNote": "7.1.1",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://byzheng.r-universe.dev",
  "Date/Publication": "2023-04-28 04:33:08 UTC",
  "RemoteUrl": "https://github.com/byzheng/bwgs",
  "RemoteRef": "HEAD",
  "RemoteSha": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-14 09:30:52 UTC",
    "User": "root"
  },
  "Author": "Louis Gautier Tran [aut, cre],\nGilles Charmet [aut],\nDelphine Ly [ctb],\nSophie Bouchet [ctb]",
  "Maintainer": "Louis Gautier Tran <louis.gautier.tran@eurominister.com>",
  "_user": "byzheng",
  "_type": "src",
  "_file": "BWGS_3.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/3c8d53fbf6179c6189088974f7e9ea6648afc9196f80e451dd6f92c7eca86fb4",
  "_filesize": 582518,
  "_sha256": "3c8d53fbf6179c6189088974f7e9ea6648afc9196f80e451dd6f92c7eca86fb4",
  "_expires": "2027-01-22T09:56:37.000Z",
  "_created": "2026-10-14T09:30:52.000Z",
  "_published": "2026-10-14T09:56:38.870Z",
  "_buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 115781902506,
      "time": 111,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11883540598"
    },
    {
      "job": 115781902504,
      "time": 112,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883481030"
    },
    {
      "job": 115781902572,
      "time": 97,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11884407157"
    },
    {
      "job": 115781902588,
      "time": 138,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883959084"
    },
    {
      "job": 115780638353,
      "time": 182,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11883391039"
    },
    {
      "job": 115781902455,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11882848655"
    },
    {
      "job": 115781902729,
      "time": 95,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11882329791"
    },
    {
      "job": 115781902744,
      "time": 83,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11882344645"
    },
    {
      "job": 115781902684,
      "time": 86,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11882793976"
    }
  ],
  "_upstream": "https://github.com/byzheng/bwgs",
  "_commit": {
    "id": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
    "author": "Bangyou Zheng <bangyou.zheng@csiro.au>",
    "committer": "Bangyou Zheng <bangyou.zheng@csiro.au>",
    "message": "fixed the map error\n",
    "time": 1682656388
  },
  "_maintainer": {
    "name": "Louis Gautier Tran",
    "email": "louis.gautier.tran@eurominister.com"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "rrBLUP",
      "role": "Imports"
    },
    {
      "package": "BGLR",
      "role": "Imports"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "randomForest",
      "role": "Imports"
    },
    {
      "package": "brnn",
      "role": "Imports"
    },
    {
      "package": "e1071",
      "role": "Imports"
    },
    {
      "package": "stringi",
      "role": "Imports"
    }
  ],
  "_owner": "byzheng",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "zhe00a",
      "count": 38,
      "uuid": 244883958
    },
    {
      "user": "byzheng",
      "count": 17,
      "uuid": 1657381
    },
    {
      "user": "vangiangtran",
      "count": 3,
      "uuid": 57601632
    }
  ],
  "_userbio": {
    "uuid": 1657381,
    "type": "user",
    "name": "Bangyou Zheng",
    "followers": 54,
    "description": "Bangyou is a research scientist at CSIRO. His research interests include crop modelling, crop adaptation, high throughput phenotype, big data and R programming."
  },
  "_downloads": {
    "count": 363,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BWGS"
  },
  "_mentions": 4,
  "_devurl": "https://github.com/eurominister/bwgs",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/BWGS.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/byzheng/bwgs",
  "_realowner": "byzheng",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2020-07-30"
    },
    {
      "version": "0.2.0",
      "date": "2021-09-09"
    },
    {
      "version": "0.2.1",
      "date": "2021-09-23"
    }
  ],
  "_exports": [
    "bwgs.cv",
    "bwgs.predict"
  ],
  "_datasets": [
    {
      "name": "MAP47K",
      "title": "INRA47K",
      "object": "inra",
      "class": [
        "data.frame"
      ],
      "fields": [
        "CODE",
        "chrom",
        "dis"
      ],
      "rows": 10000,
      "table": true,
      "tojson": true
    },
    {
      "name": "TARGET47K",
      "title": "INRA47K",
      "object": "inra",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 100,
      "table": true,
      "tojson": true
    },
    {
      "name": "TRAIN47K",
      "title": "INRA47K",
      "object": "inra",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 100,
      "table": true,
      "tojson": true
    },
    {
      "name": "YieldBLUE",
      "title": "INRA47K",
      "object": "inra",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bwgs.cv",
      "title": "Genomic Prediction with cross validation",
      "topics": [
        "bwgs.cv"
      ]
    },
    {
      "page": "bwgs.predict",
      "title": "Computes the GEBV prediction for the target population with only genotypic Data using the options for model selection.",
      "topics": [
        "bwgs.predict"
      ]
    },
    {
      "page": "inra47k",
      "title": "INRA47K",
      "topics": [
        "inra47k",
        "MAP47K",
        "TARGET47K",
        "TRAIN47K",
        "YieldBLUE"
      ]
    },
    {
      "page": "removeSaveAt",
      "title": "Remove saveAt file generated by BGLR package",
      "topics": [
        "removeSaveAt"
      ]
    }
  ],
  "_readme": "https://github.com/byzheng/bwgs/raw/HEAD/README.md",
  "_rundeps": [
    "BGLR",
    "brnn",
    "class",
    "codetools",
    "e1071",
    "foreach",
    "Formula",
    "glmnet",
    "iterators",
    "lattice",
    "MASS",
    "Matrix",
    "proxy",
    "randomForest",
    "Rcpp",
    "RcppEigen",
    "rrBLUP",
    "shape",
    "stringi",
    "survival",
    "truncnorm"
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "bwgs",
  "_universes": [
    "byzheng",
    "eurominister"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "3.0.0",
      "date": "2026-10-14T09:32:38.000Z",
      "distro": "resolute",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/c2eb958e89bdaaab97b6a954f8bad633f8a1b1bd65c00e9e5313c611056292d0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "3.0.0",
      "date": "2026-10-14T09:32:38.000Z",
      "distro": "resolute",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/eb490d02630057dd20b27efc066b6b8b91dbd367901f658ed893dec370a412c9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "3.0.0",
      "date": "2026-10-14T09:55:53.000Z",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/086a97a209d702fabae49ccb6e56358a4363b7bb45db1643cf37d5a95ca35925",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "3.0.0",
      "date": "2026-10-14T09:55:29.000Z",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/215507e50639b3b7e81963e3f6bb8606a31c5762599435042eaaba6c674b3d97",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "3.0.0",
      "date": "2026-10-14T09:32:53.000Z",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/612c190d0fb99b0f4bb07b67ef2b4c322d9f5cf443d23d640a4741bffd14dd4b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "3.0.0",
      "date": "2026-10-14T09:32:10.000Z",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/7ffe8b9ecf1e6206b7fa78e943ea7aa0b7014268671f175f3c1d33d3e7b024dd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "3.0.0",
      "date": "2026-10-14T09:31:59.000Z",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/5203573cf66f1ca388c73cfaf37bf8b1313e5d2a5563d36ef34c234558547129",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "3.0.0",
      "date": "2026-10-14T09:32:00.000Z",
      "commit": "3693ac588d5a1db690ae7e752b5472e9b14e5d30",
      "fileid": "https://r2.ropensci.org/6d87607d9262e4ab0ca12def2adb12ead7d1e9c1f932d57295bf6d97b3b944f6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/byzheng/actions/runs/38542516486"
    }
  ]
}