Package: BWGS 3.0.0

Louis Gautier Tran
BWGS: BreedWheat Genomic Selection Pipeline
Package for Breed Wheat Genomic Selection Pipeline. The R package 'BWGS' is developed by Louis Gautier Tran <[email protected]> and Gilles Charmet <[email protected]>. This repository is forked from original repository <https://forgemia.inra.fr/umr-gdec/bwgs> and modified as a R package.
Authors:
BWGS_3.0.0.tar.gz
BWGS_3.0.0.zip(r-4.7-any)BWGS_3.0.0.zip(r-4.6-any)BWGS_3.0.0.zip(r-4.5-any)
BWGS_3.0.0.tgz(r-4.6-any)BWGS_3.0.0.tgz(r-4.5-any)
BWGS_3.0.0.tar.gz(r-4.7-any)BWGS_3.0.0.tar.gz(r-4.6-any)
BWGS_3.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BWGS/json (API)
| # Install 'BWGS' in R: |
| install.packages('BWGS', repos = c('https://byzheng.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eurominister/bwgs/issues
Last updated from:3693ac588d. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 111 | ||
| source / vignettes | OK | 182 | ||
| linux-release | NOTE | 112 | ||
| macos-release | NOTE | 138 | ||
| macos-oldrel | NOTE | 97 | ||
| windows-devel | NOTE | 95 | ||
| windows-release | NOTE | 86 | ||
| windows-oldrel | NOTE | 83 | ||
| wasm-release | OK | 104 |
Exports:bwgs.cvbwgs.predict
Dependencies:BGLRbrnnclasscodetoolse1071foreachFormulaglmnetiteratorslatticeMASSMatrixproxyrandomForestRcppRcppEigenrrBLUPshapestringisurvivaltruncnorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genomic Prediction with cross validation | bwgs.cv |
| Computes the GEBV prediction for the target population with only genotypic Data using the options for model selection. | bwgs.predict |
| INRA47K | inra47k MAP47K TARGET47K TRAIN47K YieldBLUE |
| Remove saveAt file generated by BGLR package | removeSaveAt |
