Package: BWGS 3.0.0
Louis Gautier Tran
BWGS: BreedWheat Genomic Selection Pipeline
Package for Breed Wheat Genomic Selection Pipeline. The R package 'BWGS' is developed by Louis Gautier Tran <[email protected]> and Gilles Charmet <[email protected]>. This repository is forked from original repository <https://forgemia.inra.fr/umr-gdec/bwgs> and modified as a R package.
Authors:
BWGS_3.0.0.tar.gz
BWGS_3.0.0.zip(r-4.5)BWGS_3.0.0.zip(r-4.4)BWGS_3.0.0.zip(r-4.3)
BWGS_3.0.0.tgz(r-4.4-any)BWGS_3.0.0.tgz(r-4.3-any)
BWGS_3.0.0.tar.gz(r-4.5-noble)BWGS_3.0.0.tar.gz(r-4.4-noble)
BWGS_3.0.0.tgz(r-4.4-emscripten)BWGS_3.0.0.tgz(r-4.3-emscripten)
BWGS.pdf |BWGS.html✨
BWGS/json (API)
| # Install 'BWGS' in R: |
| install.packages('BWGS', repos = c('https://byzheng.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eurominister/bwgs/issues
Last updated 2 years agofrom:3693ac588d. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:bwgs.cvbwgs.predict
Dependencies:BGLRbrnnclasscodetoolse1071foreachFormulaglmnetiteratorslatticeMASSMatrixproxyrandomForestRcppRcppEigenrrBLUPshapestringisurvivaltruncnorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genomic Prediction with cross validation | bwgs.cv |
| Computes the GEBV prediction for the target population with only genotypic Data using the options for model selection. | bwgs.predict |
| INRA47K | inra47k MAP47K TARGET47K TRAIN47K YieldBLUE |
| Remove saveAt file generated by BGLR package | removeSaveAt |